PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016443039.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 495aa    MW: 54482.5 Da    PI: 8.7226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016443039.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0585107123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_016443039.1  85 FVCEICNKGFQRDQNLQLHRRGH 107
                     89*******************88 PP

2zf-C2H212.50.00044161183123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H + +
  XP_016443039.1 161 WKCEKCSKRYAVQSDWKAHSKIC 183
                     58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.86E-684107No hitNo description
PfamPF121717.9E-585107IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94985107IPR007087Zinc finger, C2H2
SMARTSM003550.01785107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-4149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.86E-6156181No hitNo description
SMARTSM00355130161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MIKGMVGDDS MSNLTSASNE ASISSSNRTH EIGSALFPHH SLAPTNTQTQ PAPTNKKKRN  60
LPGNPDPEAE VIALSPKSLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTNKE  120
VKKKVYVCPE PSCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKRY AVQSDWKAHS  180
KICGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESVRTI TTPTNPLISS SSNSHHLNLH  240
TLQNFQLKQE QQQLSNFNLL PPHPSNELSS QLFIHNPTSS SSNNIFGAAA AAHMSATALL  300
QKAAQIGVTS SSNSNSAASF FSPTTTTTTG MASCDLASRE YHQFQNISAN NSIMAPTTGN  360
FVAGHSLASY GDDNNNNKGV FDHFSVNSGF MEQIHDMQNM MAAATTALPC TNNNNVGFDE  420
GFGGANNPLI MRGKENNEGL TRDFLGLRAY PHPRDFFNNS TTTTTGLHHQ MGSSSSAAAS  480
FDHHQQNQNQ SPWQD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4577651e-140CU457765.7 S.lycopersicum DNA sequence from clone LE_HBa-76I13, complete sequence.
GenBankHG9755201e-140HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016443039.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotQ8H1F51e-125IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM1AER70.0M1AER7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000211890.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-113indeterminate(ID)-domain 2